Package org.mitre.synthea.helpers.physiology

Class IoMapper

  • All Implemented Interfaces:
    java.io.Serializable
    public class IoMapper
extends java.lang.Object
implements java.io.Serializable
    Class for handling simulation inputs and outputs.
    See Also:
    Serialized Form

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description
      static class  IoMapper.IoType  

    • Constructor Detail

      • IoMapper

        public IoMapper()

      • IoMapper

        public IoMapper​(IoMapper other)
        Copy constructor.
        Parameters:
        other - other IoMapper instance

    • Method Detail

      • getFrom

        public java.lang.String getFrom()

      • setFrom

        public void setFrom​(java.lang.String from)

      • getTo

        public java.lang.String getTo()

      • setTo

        public void setTo​(java.lang.String to)

      • getFromList

        public java.lang.String getFromList()

      • setFromList

        public void setFromList​(java.lang.String fromList)

      • getFromExp

        public java.lang.String getFromExp()

      • setFromExp

        public void setFromExp​(java.lang.String fromExp)

      • getVariance

        public double getVariance()

      • setVariance

        public void setVariance​(double varianceThreshold)

      • setPreGenerator

        public void setPreGenerator​(PreGenerator preGenerator)

      • getVitalSignTarget

        public VitalSign getVitalSignTarget()
        Retrieves the VitalSign corresponding to this IoMapper's "to" field.
        Returns:
        target VitalSign Enum

      • initialize

        public void initialize()
        Initializes the expression processor if needed with all inputs set as the default type (Decimal).

      • initialize

        public void initialize​(java.util.Map<java.lang.String,​java.lang.String> paramTypes)
        Initializes the expression processor for each thread if needed.
        Parameters:
        paramTypes - map of parameters to their CQL types

      • toModelInputs

        public double toModelInputs​(Person person,
                            long time,
                            java.util.Map<java.lang.String,​java.lang.Double> modelInputs)
        Populates model input parameters from the given person object.
        Parameters:
        person - Person instance to get parameter values from
        time - Synthea simulation time
        modelInputs - map of input parameters to be populated

      • getOutputResult

        public java.lang.Object getOutputResult​(org.simulator.math.odes.MultiTable results,
                                        double leadTime)
        Retrieves the numeric result for this IoMapper from simulation output.
        Parameters:
        results - simulation results
        leadTime - lead time in seconds before using simulation values
        Returns:
        double value or List of Double values