Package org.mitre.synthea.helpers

Class PhysiologyValueGenerator

java.lang.Object

org.mitre.synthea.helpers.ValueGenerator

org.mitre.synthea.helpers.PhysiologyValueGenerator

All Implemented Interfaces:

java.io.Serializable

public class PhysiologyValueGenerator
extends ValueGenerator

A ValueGenerator for generation of values from a physiology simulation.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static java.nio.file.Path	GENERATORS_PATH

Fields inherited from class org.mitre.synthea.helpers.ValueGenerator

person

Constructor Summary

Constructors

Constructor	Description
PhysiologyValueGenerator(PhysiologyGeneratorConfig config, SimRunner runner, VitalSign vitalSign, Person person, double outputVariance)	A generator of VitalSign values from a physiology simulation.

Method Summary

Modifier and Type	Method	Description
static java.util.List<PhysiologyValueGenerator>	fromConfig(java.io.File configFile, Person person)	Instantiates PhysiologyValueGenerators for each VitalSign output in the generator configuration at the provided path.
static java.util.List<PhysiologyValueGenerator>	fromConfig(PhysiologyGeneratorConfig generatorConfig, Person person)	Instantiates PhysiologyValueGenerators for each VitalSign output in the generator configuration.
static PhysiologyGeneratorConfig	getConfig(java.io.File configFile)	Retrieves the PhysiologyValueGenerator configuration from the given file.
static PhysiologyGeneratorConfig	getConfig(java.lang.String configPath)	Retrieves the PhysiologyValueGenerator configuration from the given path.
double	getValue(long time)	Get a value at a given point in time.
VitalSign	getVitalSign()	Returns the VitalSign this generator targets.
static java.util.List<PhysiologyValueGenerator>	loadAll(Person person)	Returns a List of all PhysiologyValueGenerators defined in the configuration directory.
static java.util.List<PhysiologyValueGenerator>	loadAll(Person person, java.lang.String subfolder)	Loads all PhysiologyValueGenerators defined in the given generator configuration subdirectory.
static void	setGeneratorsPath(java.nio.file.Path newPath)
void	setOutputVariance(double variance)	Sets the amount of variance to generate for the output VitalSign.
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

GENERATORS_PATH

public static java.nio.file.Path GENERATORS_PATH

Constructor Detail

PhysiologyValueGenerator

public PhysiologyValueGenerator(PhysiologyGeneratorConfig config,
                                SimRunner runner,
                                VitalSign vitalSign,
                                Person person,
                                double outputVariance)

A generator of VitalSign values from a physiology simulation.

Parameters:

config - physiology configuration file

person - Person instance to generate VitalSigns for

Method Detail

setGeneratorsPath

public static void setGeneratorsPath(java.nio.file.Path newPath)

loadAll

public static java.util.List<PhysiologyValueGenerator> loadAll(Person person)

Returns a List of all PhysiologyValueGenerators defined in the configuration directory.

Returns:

List of PhysiologyValueGenerator

loadAll

public static java.util.List<PhysiologyValueGenerator> loadAll(Person person,
                                                               java.lang.String subfolder)

Loads all PhysiologyValueGenerators defined in the given generator configuration subdirectory.

Parameters:

person - Person to generate values for

subfolder - generator sub directory to load configurations from

Returns:

List of PhysiologyValueGenerator

fromConfig

public static java.util.List<PhysiologyValueGenerator> fromConfig(java.io.File configFile,
                                                                  Person person)

Instantiates PhysiologyValueGenerators for each VitalSign output in the generator configuration at the provided path.

Parameters:

configFile - generator configuration file

person - Person to generate VitalSigns for

Returns:

List of PhysiologyValueGenerator instances

fromConfig

public static java.util.List<PhysiologyValueGenerator> fromConfig(PhysiologyGeneratorConfig generatorConfig,
                                                                  Person person)

Instantiates PhysiologyValueGenerators for each VitalSign output in the generator configuration.

Parameters:

generatorConfig - generator configuration object

person - Person to generate VitalSigns for

Returns:

List of PhysiologyValueGenerator instances

getConfig

public static PhysiologyGeneratorConfig getConfig(java.lang.String configPath)

Retrieves the PhysiologyValueGenerator configuration from the given path.

Parameters:

configPath - path to the generator configuration file

Returns:

generator configuration object

getConfig

public static PhysiologyGeneratorConfig getConfig(java.io.File configFile)

Retrieves the PhysiologyValueGenerator configuration from the given file.

Parameters:

configFile - generator configuration file

Returns:

generator configuration object

getVitalSign

public VitalSign getVitalSign()

Returns the VitalSign this generator targets.

Returns:

VitalSign target

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getValue

public double getValue(long time)

Description copied from class: ValueGenerator

Get a value at a given point in time.

Specified by:

getValue in class ValueGenerator

Parameters:

time - the time, needs to be current or in the future.

Returns:

a numerical value

setOutputVariance

public void setOutputVariance(double variance)

Sets the amount of variance to generate for the output VitalSign.

Parameters:

variance - amount of variance